PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000145.1_g00009.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family C2H2
Protein Properties Length: 158aa    MW: 17443.9 Da    PI: 9.5885
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000145.1_g00009.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H221.46.4e-07931123
                             EEETTTTEEESSHHHHHHHHHHT CS
                  zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                             ++C++C+k F++k+ L  H++ H
  Itr_sc000145.1_g00009.1  9 FVCKYCDKKFRNKYALGGHQNAH 31
                             89******************988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.55E-6836No hitNo description
Gene3DG3DSA:3.30.160.604.8E-4934IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.344936IPR007087Zinc finger, C2H2
PROSITE patternPS0002801131IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 158 aa     Download sequence    Send to blast
MAAEAGLDFV CKYCDKKFRN KYALGGHQNA HRFERAMDWT LKRNRRGGFM DYYPPFSPFA  60
GFPVLSGAGA GGYWNQAAAY FRAGYRIPSP EILVRPLPVE YRPRPQVLPP AMNISGGNTF  120
PVGSGSVNSA VTPIAINSNP RNAPEMMEDG ELDLNLKL
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13342714
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57520.13e-10zinc finger protein 2